Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 AC135782.3-201ENST00000562782 2105 ntBASIC14.38□□□□□ -0.11
BDNFP23560 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
BDNFP23560 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.37□□□□□ -0.11
BDNFP23560 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 DMBT1P1-203ENST00000636837 4628 ntBASIC14.37□□□□□ -0.11
BDNFP23560 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 PTENP1-202ENST00000532280 3996 ntBASIC14.37□□□□□ -0.11
BDNFP23560 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 PI4KAP2-201ENST00000360806 2080 ntBASIC14.37□□□□□ -0.11
BDNFP23560 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
BDNFP23560 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.37□□□□□ -0.11
BDNFP23560 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
BDNFP23560 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.37□□□□□ -0.11
BDNFP23560 SNORD23-201ENST00000408876 110 ntBASIC14.37□□□□□ -0.11
BDNFP23560 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
BDNFP23560 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.37□□□□□ -0.11
BDNFP23560 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC14.37□□□□□ -0.11
BDNFP23560 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC14.37□□□□□ -0.11
BDNFP23560 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC14.37□□□□□ -0.11
BDNFP23560 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 MBP-238ENST00000580402 915 ntTSL 5 BASIC14.37□□□□□ -0.11
BDNFP23560 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.37□□□□□ -0.11
BDNFP23560 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.37□□□□□ -0.11
BDNFP23560 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 AC009474.1-201ENST00000455096 1565 ntBASIC14.37□□□□□ -0.11
BDNFP23560 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
BDNFP23560 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.37□□□□□ -0.11
BDNFP23560 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.37□□□□□ -0.11
BDNFP23560 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 AC012531.1-201ENST00000562848 2680 ntBASIC14.37□□□□□ -0.11
BDNFP23560 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
BDNFP23560 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 AC011700.1-201ENST00000610409 2627 ntBASIC14.36□□□□□ -0.11
BDNFP23560 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.36□□□□□ -0.11
BDNFP23560 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.36□□□□□ -0.11
BDNFP23560 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
BDNFP23560 AC022080.1-201ENST00000366255 781 ntBASIC14.36□□□□□ -0.11
BDNFP23560 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 AL512599.1-201ENST00000430724 685 ntBASIC14.36□□□□□ -0.11
BDNFP23560 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC14.36□□□□□ -0.11
BDNFP23560 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BDNFP23560 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC14.36□□□□□ -0.11
BDNFP23560 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms