Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC012531.1-201ENST00000562848 2680 ntBASIC13.49□□□□□ -0.25
COL6A3P12111 AL590824.1-201ENST00000403828 1349 ntBASIC13.49□□□□□ -0.25
COL6A3P12111 ELOVL1-202ENST00000413844 1451 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC100774.1-201ENST00000565581 1603 ntBASIC13.49□□□□□ -0.25
COL6A3P12111 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 PMF1-BGLAP-201ENST00000320139 773 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 CHCHD3P3-201ENST00000446783 640 ntBASIC13.48□□□□□ -0.25
COL6A3P12111 AC009312.1-201ENST00000457110 592 ntTSL 4 BASIC13.48□□□□□ -0.25
COL6A3P12111 AC090409.1-202ENST00000586949 653 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A3P12111 AC013564.1-201ENST00000612806 707 ntBASIC13.48□□□□□ -0.25
COL6A3P12111 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 JAML-201ENST00000292067 1959 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
COL6A3P12111 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 AC079355.2-201ENST00000440057 190 ntBASIC13.48□□□□□ -0.25
COL6A3P12111 LINC00299-203ENST00000444688 537 ntTSL 4 BASIC13.48□□□□□ -0.25
COL6A3P12111 IL12A-205ENST00000480787 863 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A3P12111 TRIAP1-202ENST00000546954 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 SLC4A5-202ENST00000358683 3142 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 LINC00642-201ENST00000419459 2026 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A3P12111 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.48□□□□□ -0.25
COL6A3P12111 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 AC007686.3-201ENST00000619017 3487 ntBASIC13.48□□□□□ -0.25
COL6A3P12111 HNRNPC-204ENST00000449098 1599 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 PABPC1L-207ENST00000372824 2223 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A3P12111 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 SPATA32-201ENST00000331780 1284 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 IFITM2-202ENST00000399817 659 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 AL365194.1-201ENST00000440032 361 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A3P12111 IP6K2-218ENST00000443964 973 ntTSL 4 BASIC13.48□□□□□ -0.25
COL6A3P12111 MAF1-204ENST00000532522 1098 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 ZCRB1-205ENST00000552673 907 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A3P12111 METTL23-213ENST00000591571 585 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A3P12111 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A3P12111 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A3P12111 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
COL6A3P12111 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 AL121900.1-201ENST00000428285 1695 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 IGKV2D-26-201ENST00000390268 390 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
COL6A3P12111 AC004217.1-201ENST00000469026 794 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 ZNF331-218ENST00000513265 739 ntTSL 3 BASIC13.47□□□□□ -0.25
COL6A3P12111 IGHVII-65-1-201ENST00000519992 302 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 AC127496.2-201ENST00000576859 368 ntTSL 3 BASIC13.47□□□□□ -0.25
COL6A3P12111 pRNA.10-201ENST00000613590 89 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 AC106774.10-201ENST00000638486 599 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
COL6A3P12111 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 PAX6-249ENST00000639034 1597 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 PCNA-201ENST00000379143 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 C16orf46-202ENST00000378611 1857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 MIPEPP1-201ENST00000413533 2027 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 AL663070.1-201ENST00000438210 725 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 AC072022.2-201ENST00000449623 672 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 RNA5SP40-201ENST00000517147 110 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 PTOV1-AS2-201ENST00000593654 596 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 TFB1M-201ENST00000367166 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 SYT17-204ENST00000562711 1702 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A3P12111 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
COL6A3P12111 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 AC007336.3-201ENST00000623886 2160 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A3P12111 AL513497.1-201ENST00000624273 2083 ntBASIC13.47□□□□□ -0.25
COL6A3P12111 TMEM263-209ENST00000551813 1483 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
COL6A3P12111 FAM76A-202ENST00000234549 992 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 PHBP5-201ENST00000449310 768 ntBASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms