Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC091181.1-201ENST00000623762 2098 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 AC092053.3-201ENST00000641308 4975 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA1P55317 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA1P55317 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA1P55317 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 RPL18AP8-201ENST00000486071 528 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 ZNF767P-206ENST00000513792 565 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 RN7SL774P-201ENST00000577467 290 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 FTO-214ENST00000636218 2227 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 ANKRD20A7P-201ENST00000402318 2414 ntBASIC13.22□□□□□ -0.29
FOXA1P55317 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 SERPING1-203ENST00000378323 1733 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA1P55317 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA1P55317 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
FOXA1P55317 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA1P55317 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.21□□□□□ -0.29
FOXA1P55317 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA1P55317 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 RUBCN-202ENST00000296343 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 SUCO-209ENST00000610051 2925 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 KRT18P9-201ENST00000604826 1300 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA1P55317 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 CHIAP2-201ENST00000369743 2829 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA1P55317 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 GK-202ENST00000378941 458 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 SERF2-206ENST00000409291 807 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 AC003958.1-201ENST00000435883 421 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 ACTBP11-201ENST00000436287 1126 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 POU5F1P2-201ENST00000521750 823 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC13.21□□□□□ -0.29
FOXA1P55317 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 RN7SL665P-201ENST00000578793 300 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA1P55317 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA1P55317 Z82244.1-201ENST00000631502 840 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA1P55317 AC092117.1-201ENST00000621230 3250 ntBASIC13.21□□□□□ -0.29
FOXA1P55317 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA1P55317 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC13.21□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms