Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 MSANTD2P1-201ENST00000445341 1368 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 NQO2-204ENST00000380454 851 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 KRT18P44-201ENST00000416086 1285 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 GRPEL2P1-201ENST00000453145 339 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 SNORD3B-1-201ENST00000577988 758 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AL591424.3-201ENST00000614278 872 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 BRD7P5-201ENST00000299197 1822 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 HNRNPA1P25-201ENST00000422644 937 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 PSAT1P2-201ENST00000426107 972 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 RBPMSLP-201ENST00000433427 502 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 ST13P19-201ENST00000442505 1124 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 CDK4P1-201ENST00000454213 828 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 RN7SL672P-201ENST00000474091 317 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 LY6E-215ENST00000523847 427 ntTSL 3 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 MBP-230ENST00000528160 584 ntTSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 BMF-206ENST00000558774 671 ntTSL 3 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AC104506.1-201ENST00000609247 429 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AC005274.1-201ENST00000623460 802 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AL050341.2-201ENST00000567508 1541 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL28A1Q2UY09 AL365181.1-201ENST00000564032 1828 ntBASIC13.23□□□□□ -0.29
COL28A1Q2UY09 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 218.4 ms