Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL031595.1-201ENST00000623969 4709 ntBASIC14.46□□□□□ -0.1
BDNFP23560 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
BDNFP23560 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.46□□□□□ -0.1
BDNFP23560 AC007614.4-201ENST00000564048 1827 ntBASIC14.45□□□□□ -0.1
BDNFP23560 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 ZNF493-208ENST00000599461 1769 ntBASIC14.45□□□□□ -0.1
BDNFP23560 AGAP12P-201ENST00000585227 2359 ntBASIC14.45□□□□□ -0.1
BDNFP23560 PPP1R26P2-201ENST00000611403 3595 ntBASIC14.45□□□□□ -0.1
BDNFP23560 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.45□□□□□ -0.1
BDNFP23560 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 RN7SL582P-201ENST00000491078 279 ntBASIC14.45□□□□□ -0.1
BDNFP23560 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC14.45□□□□□ -0.1
BDNFP23560 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.45□□□□□ -0.1
BDNFP23560 GOLGA2P7-209ENST00000560408 745 ntBASIC14.45□□□□□ -0.1
BDNFP23560 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 AC026120.2-201ENST00000617239 309 ntBASIC14.45□□□□□ -0.1
BDNFP23560 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
BDNFP23560 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
BDNFP23560 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
BDNFP23560 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
BDNFP23560 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
BDNFP23560 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.44□□□□□ -0.1
BDNFP23560 AP000244.1-201ENST00000424582 201 ntBASIC14.44□□□□□ -0.1
BDNFP23560 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.44□□□□□ -0.1
BDNFP23560 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC14.44□□□□□ -0.1
BDNFP23560 AC104212.2-201ENST00000478813 628 ntBASIC14.44□□□□□ -0.1
BDNFP23560 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 SAA2-206ENST00000530400 323 ntTSL 3 BASIC14.44□□□□□ -0.1
BDNFP23560 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
BDNFP23560 AC005777.1-201ENST00000588332 187 ntBASIC14.44□□□□□ -0.1
BDNFP23560 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
BDNFP23560 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC14.44□□□□□ -0.1
BDNFP23560 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
BDNFP23560 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BDNFP23560 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
BDNFP23560 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
BDNFP23560 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
BDNFP23560 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14.43□□□□□ -0.1
BDNFP23560 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
BDNFP23560 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC14.43□□□□□ -0.1
BDNFP23560 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
BDNFP23560 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
BDNFP23560 AL355334.1-201ENST00000417713 215 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms