Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB1P09429 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
HMGB1P09429 OR52M2P-201ENST00000414298 959 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 AC073210.1-201ENST00000414799 232 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB1P09429 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB1P09429 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGB1P09429 HERC2P11-201ENST00000562845 725 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 AC100756.2-201ENST00000569537 736 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
HMGB1P09429 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 AC117503.4-201ENST00000623229 1418 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 AC007336.3-201ENST00000623886 2160 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 AC090502.4-201ENST00000551714 1386 ntBASIC16.18■□□□□ 0.18
HMGB1P09429 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGB1P09429 CELP-201ENST00000411440 1249 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGB1P09429 RN7SL769P-201ENST00000469386 295 ntBASIC16.18■□□□□ 0.18
HMGB1P09429 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGB1P09429 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.18■□□□□ 0.18
HMGB1P09429 AC134698.3-201ENST00000523880 214 ntBASIC16.18■□□□□ 0.18
HMGB1P09429 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGB1P09429 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.18■□□□□ 0.18
HMGB1P09429 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HMGB1P09429 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB1P09429 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HMGB1P09429 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB1P09429 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB1P09429 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms