Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.29□□□□□ -0.28
FOXA1P55317 RN7SL788P-201ENST00000460504 316 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 AC090857.1-201ENST00000527400 390 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC13.29□□□□□ -0.28
FOXA1P55317 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
FOXA1P55317 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA1P55317 AL049840.2-201ENST00000602722 535 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 MIR6769A-201ENST00000617340 73 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
FOXA1P55317 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
FOXA1P55317 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 ZNF621-204ENST00000431278 2613 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 CTAGE10P-201ENST00000318353 2408 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 LINC00265-2P-201ENST00000413372 782 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 ACTG1P2-201ENST00000415776 1125 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 ACTG1P11-201ENST00000425411 1125 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 ISCA2P1-201ENST00000425548 448 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 RPSAP15-201ENST00000448168 861 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA1P55317 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 AL109837.1-201ENST00000603272 613 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.28□□□□□ -0.28
FOXA1P55317 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 TUBBP5-203ENST00000508529 1334 ntBASIC13.28□□□□□ -0.28
FOXA1P55317 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 CFAP65-204ENST00000410037 2703 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
FOXA1P55317 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
FOXA1P55317 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA1P55317 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.28
FOXA1P55317 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
FOXA1P55317 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
FOXA1P55317 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms