Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC42.79■■■■■ 4.44
SHROOM4Q9ULL8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC42.79■■■■■ 4.44
SHROOM4Q9ULL8 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC42.79■■■■■ 4.44
SHROOM4Q9ULL8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC42.78■■■■■ 4.44
SHROOM4Q9ULL8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC42.78■■■■■ 4.44
SHROOM4Q9ULL8 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC42.78■■■■■ 4.44
SHROOM4Q9ULL8 GAS2L1P2-201ENST00000436355 1356 ntBASIC42.78■■■■■ 4.44
SHROOM4Q9ULL8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC42.78■■■■■ 4.44
SHROOM4Q9ULL8 AC020928.2-201ENST00000588717 2197 ntBASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC42.77■■■■■ 4.44
SHROOM4Q9ULL8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC42.76■■■■■ 4.44
SHROOM4Q9ULL8 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC42.76■■■■■ 4.44
SHROOM4Q9ULL8 AC080038.1-201ENST00000611274 1154 ntBASIC42.76■■■■■ 4.44
SHROOM4Q9ULL8 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC42.76■■■■■ 4.44
SHROOM4Q9ULL8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC42.75■■■■■ 4.43
SHROOM4Q9ULL8 KRT18P61-201ENST00000585825 1298 ntBASIC42.75■■■■■ 4.43
SHROOM4Q9ULL8 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC42.75■■■■■ 4.43
SHROOM4Q9ULL8 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC42.75■■■■■ 4.43
SHROOM4Q9ULL8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 LINC02228-203ENST00000641970 1355 ntBASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC42.74■■■■■ 4.43
SHROOM4Q9ULL8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC42.73■■■■■ 4.43
SHROOM4Q9ULL8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC42.73■■■■■ 4.43
SHROOM4Q9ULL8 SHF-207ENST00000560540 2062 ntTSL 5 BASIC42.73■■■■■ 4.43
SHROOM4Q9ULL8 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 CDCA4P2-201ENST00000441182 718 ntBASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC42.72■■■■■ 4.43
SHROOM4Q9ULL8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC42.71■■■■■ 4.43
SHROOM4Q9ULL8 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC42.71■■■■■ 4.43
SHROOM4Q9ULL8 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC42.71■■■■■ 4.43
SHROOM4Q9ULL8 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC42.71■■■■■ 4.43
SHROOM4Q9ULL8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC42.71■■■■■ 4.43
SHROOM4Q9ULL8 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC42.7■■■■■ 4.43
SHROOM4Q9ULL8 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC42.69■■■■■ 4.43
SHROOM4Q9ULL8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC42.69■■■■■ 4.43
SHROOM4Q9ULL8 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC42.69■■■■■ 4.43
SHROOM4Q9ULL8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 AP003733.4-201ENST00000623785 1697 ntBASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC42.69■■■■■ 4.42
SHROOM4Q9ULL8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC42.68■■■■■ 4.42
SHROOM4Q9ULL8 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC42.68■■■■■ 4.42
SHROOM4Q9ULL8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC42.68■■■■■ 4.42
SHROOM4Q9ULL8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC42.68■■■■■ 4.42
SHROOM4Q9ULL8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC42.68■■■■■ 4.42
SHROOM4Q9ULL8 AL161729.1-201ENST00000604104 1402 ntBASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 GXYLT1P5-201ENST00000614548 1189 ntBASIC42.67■■■■■ 4.42
SHROOM4Q9ULL8 AC142381.3-201ENST00000568208 1670 ntBASIC42.66■■■■■ 4.42
SHROOM4Q9ULL8 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC42.66■■■■■ 4.42
SHROOM4Q9ULL8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC42.66■■■■■ 4.42
SHROOM4Q9ULL8 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC42.65■■■■■ 4.42
SHROOM4Q9ULL8 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC42.65■■■■■ 4.42
SHROOM4Q9ULL8 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC42.65■■■■■ 4.42
SHROOM4Q9ULL8 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC42.65■■■■■ 4.42
SHROOM4Q9ULL8 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC42.64■■■■■ 4.42
SHROOM4Q9ULL8 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC42.63■■■■■ 4.42
SHROOM4Q9ULL8 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC42.62■■■■■ 4.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms