Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTFDC1Q9BY42 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
RTFDC1Q9BY42 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC27.45■■□□□ 1.99
RTFDC1Q9BY42 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
RTFDC1Q9BY42 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
RTFDC1Q9BY42 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.45■■□□□ 1.98
RTFDC1Q9BY42 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC27.45■■□□□ 1.98
RTFDC1Q9BY42 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
RTFDC1Q9BY42 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 DENND3-207ENST00000518347 850 ntTSL 2 BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RTFDC1Q9BY42 MPST-204ENST00000404393 1329 ntTSL 5 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC27.43■■□□□ 1.98
RTFDC1Q9BY42 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.42■■□□□ 1.98
RTFDC1Q9BY42 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 NT5C3AP1-201ENST00000394500 1012 ntBASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC27.41■■□□□ 1.98
RTFDC1Q9BY42 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RTFDC1Q9BY42 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 SHF-207ENST00000560540 2062 ntTSL 5 BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 KRT18P61-201ENST00000585825 1298 ntBASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
RTFDC1Q9BY42 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC27.39■■□□□ 1.97
RTFDC1Q9BY42 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTFDC1Q9BY42 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTFDC1Q9BY42 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTFDC1Q9BY42 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC27.38■■□□□ 1.97
RTFDC1Q9BY42 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTFDC1Q9BY42 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 AC006015.1-201ENST00000429970 570 ntBASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC27.37■■□□□ 1.97
RTFDC1Q9BY42 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC27.36■■□□□ 1.97
RTFDC1Q9BY42 AC105233.4-201ENST00000642045 216 ntBASIC27.36■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms