Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 AC080038.3-201ENST00000623346 1952 ntBASIC19.23■□□□□ 0.67
CMTM3Q96MX0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CMTM3Q96MX0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CMTM3Q96MX0 AC026310.3-201ENST00000625186 2373 ntBASIC19.23■□□□□ 0.67
CMTM3Q96MX0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CMTM3Q96MX0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CMTM3Q96MX0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CMTM3Q96MX0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 RPS2P7-201ENST00000447334 885 ntBASIC19.22■□□□□ 0.67
CMTM3Q96MX0 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CMTM3Q96MX0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CMTM3Q96MX0 PKD1P6-201ENST00000343738 4769 ntBASIC19.21■□□□□ 0.67
CMTM3Q96MX0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 SLC25A24-204ENST00000569674 2357 ntBASIC19.2■□□□□ 0.66
CMTM3Q96MX0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 AC016575.1-201ENST00000607026 382 ntBASIC19.2■□□□□ 0.66
CMTM3Q96MX0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CMTM3Q96MX0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CMTM3Q96MX0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 AC087742.1-201ENST00000575880 1738 ntBASIC19.18■□□□□ 0.66
CMTM3Q96MX0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CMTM3Q96MX0 AL353803.4-201ENST00000565882 1934 ntBASIC19.17■□□□□ 0.66
CMTM3Q96MX0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CMTM3Q96MX0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CMTM3Q96MX0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CMTM3Q96MX0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.14■□□□□ 0.66
CMTM3Q96MX0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.14■□□□□ 0.66
CMTM3Q96MX0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CMTM3Q96MX0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms