Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.84■■□□□ 1.25
SHROOM3Q8TF72 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 AC104564.3-201ENST00000582367 638 ntBASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SHROOM3Q8TF72 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 FP325331.1-202ENST00000623531 1380 ntBASIC22.83■■□□□ 1.24
SHROOM3Q8TF72 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 AC026271.2-201ENST00000428091 497 ntBASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM3Q8TF72 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
SHROOM3Q8TF72 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 AC006455.2-201ENST00000429931 906 ntBASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 ZNRF2P3-201ENST00000424200 374 ntBASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
SHROOM3Q8TF72 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 AL353803.4-201ENST00000565882 1934 ntBASIC22.79■■□□□ 1.24
SHROOM3Q8TF72 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 AL136116.3-201ENST00000402907 1138 ntBASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM3Q8TF72 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
SHROOM3Q8TF72 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.23
SHROOM3Q8TF72 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms