Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 AC233723.2-201ENST00000623798 2106 ntBASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 LINC00565-201ENST00000562710 2331 ntBASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CLIP4Q8N3C7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CLIP4Q8N3C7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CLIP4Q8N3C7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 AC079630.1-202ENST00000618127 1840 ntBASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLIP4Q8N3C7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
CLIP4Q8N3C7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 C1orf229-201ENST00000623686 2258 ntBASIC20.74■□□□□ 0.91
CLIP4Q8N3C7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP4Q8N3C7 AC021242.3-201ENST00000607598 1377 ntBASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.72■□□□□ 0.91
CLIP4Q8N3C7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms