Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13DQ5THJ4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 GXYLT1P5-201ENST00000614548 1189 ntBASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 AL161729.1-201ENST00000604104 1402 ntBASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13DQ5THJ4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
VPS13DQ5THJ4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 DUX4L4-201ENST00000566884 1269 ntBASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS13DQ5THJ4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 ALDH1A3-203ENST00000557963 1670 ntBASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS13DQ5THJ4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC15.21■□□□□ 0.02
VPS13DQ5THJ4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.21■□□□□ 0.02
VPS13DQ5THJ4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 AC104771.1-201ENST00000603335 964 ntBASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 AL354811.1-201ENST00000610286 706 ntBASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 AC073111.5-205ENST00000641717 521 ntBASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 GXYLT1P2-201ENST00000433312 1230 ntBASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS13DQ5THJ4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13DQ5THJ4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13DQ5THJ4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms