Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LSM3P62310 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM3P62310 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LSM3P62310 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM3P62310 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
LSM3P62310 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
LSM3P62310 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM3P62310 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM3P62310 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.08■□□□□ 0.81
LSM3P62310 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM3P62310 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.08■□□□□ 0.81
LSM3P62310 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.08■□□□□ 0.8
LSM3P62310 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LSM3P62310 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.08■□□□□ 0.8
LSM3P62310 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LSM3P62310 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LSM3P62310 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
LSM3P62310 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.07■□□□□ 0.8
LSM3P62310 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LSM3P62310 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.07■□□□□ 0.8
LSM3P62310 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.07■□□□□ 0.8
LSM3P62310 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LSM3P62310 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM3P62310 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.07■□□□□ 0.8
LSM3P62310 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM3P62310 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM3P62310 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
LSM3P62310 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM3P62310 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 AL161729.1-201ENST00000604104 1402 ntBASIC20.06■□□□□ 0.8
LSM3P62310 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
LSM3P62310 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LSM3P62310 RNF165-205ENST00000588679 2904 ntBASIC20.06■□□□□ 0.8
LSM3P62310 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LSM3P62310 AC092667.1-201ENST00000434301 2586 ntBASIC20.05■□□□□ 0.8
LSM3P62310 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
LSM3P62310 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LSM3P62310 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.05■□□□□ 0.8
LSM3P62310 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LSM3P62310 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM3P62310 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.04■□□□□ 0.8
LSM3P62310 AC079630.1-202ENST00000618127 1840 ntBASIC20.04■□□□□ 0.8
LSM3P62310 AC005229.4-201ENST00000610085 2198 ntBASIC20.04■□□□□ 0.8
LSM3P62310 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.04■□□□□ 0.8
LSM3P62310 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 AL162393.1-201ENST00000437852 946 ntBASIC20.04■□□□□ 0.8
LSM3P62310 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LSM3P62310 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM3P62310 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM3P62310 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM3P62310 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM3P62310 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM3P62310 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM3P62310 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
LSM3P62310 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM3P62310 AC080038.3-201ENST00000623346 1952 ntBASIC20.03■□□□□ 0.8
LSM3P62310 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM3P62310 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.02■□□□□ 0.8
LSM3P62310 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LSM3P62310 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LSM3P62310 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LSM3P62310 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.02■□□□□ 0.8
LSM3P62310 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.02■□□□□ 0.8
LSM3P62310 MIR3960-201ENST00000583311 91 ntBASIC20.02■□□□□ 0.8
LSM3P62310 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
LSM3P62310 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LSM3P62310 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms