Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 KRT18P10-201ENST00000388836 1287 ntBASIC25.3■■□□□ 1.64
CLCN1P35523 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CLCN1P35523 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CLCN1P35523 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
CLCN1P35523 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CLCN1P35523 AC007952.6-201ENST00000573168 2673 ntBASIC25.3■■□□□ 1.64
CLCN1P35523 AC003957.1-201ENST00000625108 2673 ntBASIC25.3■■□□□ 1.64
CLCN1P35523 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC25.29■■□□□ 1.64
CLCN1P35523 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC25.29■■□□□ 1.64
CLCN1P35523 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CLCN1P35523 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC25.29■■□□□ 1.64
CLCN1P35523 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLCN1P35523 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.28■■□□□ 1.64
CLCN1P35523 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CLCN1P35523 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CLCN1P35523 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.27■■□□□ 1.64
CLCN1P35523 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.27■■□□□ 1.64
CLCN1P35523 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CLCN1P35523 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
CLCN1P35523 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CLCN1P35523 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
CLCN1P35523 KRT18P60-201ENST00000312876 1297 ntBASIC25.26■■□□□ 1.63
CLCN1P35523 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CLCN1P35523 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
CLCN1P35523 DUX4L9-201ENST00000449051 1259 ntBASIC25.26■■□□□ 1.63
CLCN1P35523 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CLCN1P35523 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
CLCN1P35523 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.26■■□□□ 1.63
CLCN1P35523 C11orf96-202ENST00000528572 1834 ntBASIC25.26■■□□□ 1.63
CLCN1P35523 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.25■■□□□ 1.63
CLCN1P35523 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC25.25■■□□□ 1.63
CLCN1P35523 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.25■■□□□ 1.63
CLCN1P35523 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.25■■□□□ 1.63
CLCN1P35523 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
CLCN1P35523 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLCN1P35523 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
CLCN1P35523 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
CLCN1P35523 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC25.24■■□□□ 1.63
CLCN1P35523 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.24■■□□□ 1.63
CLCN1P35523 RPS2P7-201ENST00000447334 885 ntBASIC25.24■■□□□ 1.63
CLCN1P35523 AC018755.3-202ENST00000596210 929 ntBASIC25.24■■□□□ 1.63
CLCN1P35523 AC129492.7-201ENST00000622992 756 ntBASIC25.24■■□□□ 1.63
CLCN1P35523 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
CLCN1P35523 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.24■■□□□ 1.63
CLCN1P35523 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CLCN1P35523 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CLCN1P35523 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC25.23■■□□□ 1.63
CLCN1P35523 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CLCN1P35523 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CLCN1P35523 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CLCN1P35523 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CLCN1P35523 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.23■■□□□ 1.63
CLCN1P35523 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.23■■□□□ 1.63
CLCN1P35523 HLA-L-211ENST00000482052 1765 ntBASIC25.23■■□□□ 1.63
CLCN1P35523 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC25.22■■□□□ 1.63
CLCN1P35523 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
CLCN1P35523 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.22■■□□□ 1.63
CLCN1P35523 ABHD17AP5-201ENST00000580133 923 ntBASIC25.22■■□□□ 1.63
CLCN1P35523 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.22■■□□□ 1.63
CLCN1P35523 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CLCN1P35523 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CLCN1P35523 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
CLCN1P35523 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
CLCN1P35523 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CLCN1P35523 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CLCN1P35523 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CLCN1P35523 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.21■■□□□ 1.63
CLCN1P35523 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.21■■□□□ 1.63
CLCN1P35523 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
CLCN1P35523 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CLCN1P35523 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC25.21■■□□□ 1.63
CLCN1P35523 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.63
CLCN1P35523 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CLCN1P35523 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
CLCN1P35523 IDNK-203ENST00000405990 629 ntTSL 2 BASIC25.2■■□□□ 1.62
CLCN1P35523 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.2■■□□□ 1.62
CLCN1P35523 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
CLCN1P35523 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CLCN1P35523 AF106564.1-201ENST00000607058 2553 ntBASIC25.2■■□□□ 1.62
CLCN1P35523 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CLCN1P35523 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
CLCN1P35523 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms