Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RORAP35398 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RORAP35398 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.21■□□□□ 0.99
RORAP35398 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RORAP35398 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
RORAP35398 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RORAP35398 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RORAP35398 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RORAP35398 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RORAP35398 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.2■□□□□ 0.98
RORAP35398 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RORAP35398 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RORAP35398 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RORAP35398 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.19■□□□□ 0.98
RORAP35398 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RORAP35398 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.19■□□□□ 0.98
RORAP35398 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.19■□□□□ 0.98
RORAP35398 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.19■□□□□ 0.98
RORAP35398 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RORAP35398 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RORAP35398 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RORAP35398 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RORAP35398 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RORAP35398 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RORAP35398 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RORAP35398 FP325331.1-202ENST00000623531 1380 ntBASIC21.18■□□□□ 0.98
RORAP35398 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RORAP35398 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
RORAP35398 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RORAP35398 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RORAP35398 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.17■□□□□ 0.98
RORAP35398 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.17■□□□□ 0.98
RORAP35398 AL499627.2-201ENST00000606283 725 ntBASIC21.17■□□□□ 0.98
RORAP35398 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RORAP35398 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.17■□□□□ 0.98
RORAP35398 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RORAP35398 AC093323.1-202ENST00000635031 2045 ntBASIC21.16■□□□□ 0.98
RORAP35398 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.16■□□□□ 0.98
RORAP35398 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.16■□□□□ 0.98
RORAP35398 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RORAP35398 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RORAP35398 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RORAP35398 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 IRS3P-201ENST00000223076 1006 ntBASIC21.15■□□□□ 0.98
RORAP35398 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.15■□□□□ 0.98
RORAP35398 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 SLC47A1P1-202ENST00000449666 945 ntBASIC21.15■□□□□ 0.98
RORAP35398 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.15■□□□□ 0.98
RORAP35398 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.15■□□□□ 0.98
RORAP35398 DUX4L4-201ENST00000566884 1269 ntBASIC21.15■□□□□ 0.98
RORAP35398 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RORAP35398 AC133637.1-201ENST00000624115 1537 ntBASIC21.14■□□□□ 0.98
RORAP35398 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RORAP35398 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.14■□□□□ 0.97
RORAP35398 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.14■□□□□ 0.97
RORAP35398 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RORAP35398 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
RORAP35398 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RORAP35398 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RORAP35398 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.13■□□□□ 0.97
RORAP35398 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RORAP35398 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.13■□□□□ 0.97
RORAP35398 MIR6821-201ENST00000617625 74 ntBASIC21.13■□□□□ 0.97
RORAP35398 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RORAP35398 ABCB10P4-201ENST00000566803 2184 ntBASIC21.13■□□□□ 0.97
RORAP35398 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.12■□□□□ 0.97
RORAP35398 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.12■□□□□ 0.97
RORAP35398 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 AC144652.1-201ENST00000609974 1624 ntBASIC21.12■□□□□ 0.97
RORAP35398 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RORAP35398 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.12■□□□□ 0.97
RORAP35398 MIR5787-201ENST00000611784 55 ntBASIC21.12■□□□□ 0.97
RORAP35398 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
RORAP35398 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RORAP35398 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.12■□□□□ 0.97
RORAP35398 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RORAP35398 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RORAP35398 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RORAP35398 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RORAP35398 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.11■□□□□ 0.97
RORAP35398 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RORAP35398 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.11■□□□□ 0.97
RORAP35398 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RORAP35398 AC097381.1-201ENST00000429019 1296 ntBASIC21.11■□□□□ 0.97
RORAP35398 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.11■□□□□ 0.97
RORAP35398 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms