Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LMX1BO60663 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.59■□□□□ 0.73
LMX1BO60663 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.59■□□□□ 0.73
LMX1BO60663 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LMX1BO60663 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LMX1BO60663 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LMX1BO60663 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LMX1BO60663 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LMX1BO60663 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
LMX1BO60663 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.58■□□□□ 0.72
LMX1BO60663 MTDHP2-201ENST00000601468 714 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 MIR6724-1-201ENST00000616420 92 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 MIR6724-2-201ENST00000616483 92 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 MIR6724-4-201ENST00000617390 92 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 MIR6724-3-201ENST00000622482 92 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 AL117332.1-201ENST00000622628 974 ntBASIC19.58■□□□□ 0.72
LMX1BO60663 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LMX1BO60663 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LMX1BO60663 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LMX1BO60663 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LMX1BO60663 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LMX1BO60663 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1BO60663 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
LMX1BO60663 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
LMX1BO60663 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1BO60663 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1BO60663 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.57■□□□□ 0.72
LMX1BO60663 AL356740.2-201ENST00000601559 647 ntBASIC19.57■□□□□ 0.72
LMX1BO60663 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.57■□□□□ 0.72
LMX1BO60663 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.57■□□□□ 0.72
LMX1BO60663 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1BO60663 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1BO60663 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1BO60663 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 AC079630.1-202ENST00000618127 1840 ntBASIC19.56■□□□□ 0.72
LMX1BO60663 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.56■□□□□ 0.72
LMX1BO60663 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1BO60663 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 MIR3621-201ENST00000580529 85 ntBASIC19.56■□□□□ 0.72
LMX1BO60663 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1BO60663 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1BO60663 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
LMX1BO60663 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LMX1BO60663 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.55■□□□□ 0.72
LMX1BO60663 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.55■□□□□ 0.72
LMX1BO60663 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
LMX1BO60663 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1BO60663 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LMX1BO60663 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.54■□□□□ 0.72
LMX1BO60663 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.54■□□□□ 0.72
LMX1BO60663 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LMX1BO60663 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1BO60663 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LMX1BO60663 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1BO60663 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
LMX1BO60663 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1BO60663 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.53■□□□□ 0.72
LMX1BO60663 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.53■□□□□ 0.72
LMX1BO60663 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.53■□□□□ 0.72
LMX1BO60663 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LMX1BO60663 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.53■□□□□ 0.72
LMX1BO60663 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms