Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
MSH5O43196 EFS-203ENST00000429593 2610 ntTSL 2 BASIC29.75■■■□□ 2.35
MSH5O43196 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
MSH5O43196 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
MSH5O43196 IKBKGP1-201ENST00000612193 1073 ntBASIC29.74■■■□□ 2.35
MSH5O43196 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC29.74■■■□□ 2.35
MSH5O43196 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC29.74■■■□□ 2.35
MSH5O43196 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC29.74■■■□□ 2.35
MSH5O43196 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC29.74■■■□□ 2.35
MSH5O43196 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC29.73■■■□□ 2.35
MSH5O43196 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC29.73■■■□□ 2.35
MSH5O43196 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC29.73■■■□□ 2.35
MSH5O43196 JTB-203ENST00000368589 1216 ntTSL 2 BASIC29.73■■■□□ 2.35
MSH5O43196 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
MSH5O43196 AC027682.1-201ENST00000562846 899 ntBASIC29.73■■■□□ 2.35
MSH5O43196 AC092171.4-201ENST00000609130 632 ntBASIC29.73■■■□□ 2.35
MSH5O43196 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH5O43196 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
MSH5O43196 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH5O43196 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH5O43196 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH5O43196 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
MSH5O43196 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH5O43196 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
MSH5O43196 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH5O43196 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 SERBP1P1-201ENST00000396021 1160 ntBASIC29.71■■■□□ 2.35
MSH5O43196 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.71■■■□□ 2.35
MSH5O43196 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 AC010501.1-201ENST00000606270 1962 ntBASIC29.71■■■□□ 2.35
MSH5O43196 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC29.71■■■□□ 2.35
MSH5O43196 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
MSH5O43196 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC29.71■■■□□ 2.35
MSH5O43196 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH5O43196 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH5O43196 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH5O43196 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.35
MSH5O43196 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.7■■■□□ 2.35
MSH5O43196 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.7■■■□□ 2.35
MSH5O43196 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.34
MSH5O43196 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
MSH5O43196 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
MSH5O43196 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
MSH5O43196 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC29.69■■■□□ 2.34
MSH5O43196 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC29.69■■■□□ 2.34
MSH5O43196 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
MSH5O43196 RHOF-204ENST00000537265 699 ntTSL 2 BASIC29.69■■■□□ 2.34
MSH5O43196 LINC00565-201ENST00000562710 2331 ntBASIC29.69■■■□□ 2.34
MSH5O43196 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.69■■■□□ 2.34
MSH5O43196 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
MSH5O43196 STK25-234ENST00000535007 2459 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH5O43196 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH5O43196 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH5O43196 AC005703.6-201ENST00000623265 1329 ntBASIC29.68■■■□□ 2.34
MSH5O43196 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH5O43196 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH5O43196 AC099791.1-201ENST00000416440 715 ntBASIC29.67■■■□□ 2.34
MSH5O43196 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH5O43196 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH5O43196 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.67■■■□□ 2.34
MSH5O43196 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH5O43196 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH5O43196 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH5O43196 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH5O43196 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC29.66■■■□□ 2.34
MSH5O43196 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 AC096887.2-201ENST00000623443 1957 ntBASIC29.66■■■□□ 2.34
MSH5O43196 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC29.66■■■□□ 2.34
MSH5O43196 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH5O43196 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC29.65■■■□□ 2.34
MSH5O43196 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC29.65■■■□□ 2.34
MSH5O43196 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 PTCHD3P2-201ENST00000424937 1205 ntBASIC29.65■■■□□ 2.34
MSH5O43196 SEC63P1-201ENST00000425785 1258 ntBASIC29.65■■■□□ 2.34
MSH5O43196 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC29.65■■■□□ 2.34
MSH5O43196 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC29.65■■■□□ 2.34
MSH5O43196 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
MSH5O43196 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH5O43196 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC29.64■■■□□ 2.34
MSH5O43196 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC29.64■■■□□ 2.34
MSH5O43196 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH5O43196 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
MSH5O43196 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.64■■■□□ 2.34
MSH5O43196 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms