Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.54■■□□□ 1.04
CACNA1AO00555 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.54■■□□□ 1.04
CACNA1AO00555 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.54■■□□□ 1.04
CACNA1AO00555 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
CACNA1AO00555 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
CACNA1AO00555 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.53■■□□□ 1.04
CACNA1AO00555 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.53■■□□□ 1.04
CACNA1AO00555 AC231657.2-201ENST00000624556 255 ntBASIC21.53■■□□□ 1.04
CACNA1AO00555 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 AL158047.1-201ENST00000445918 881 ntBASIC21.53■■□□□ 1.04
CACNA1AO00555 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.53■■□□□ 1.04
CACNA1AO00555 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CACNA1AO00555 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.53■■□□□ 1.04
CACNA1AO00555 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CACNA1AO00555 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CACNA1AO00555 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.52■■□□□ 1.04
CACNA1AO00555 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
CACNA1AO00555 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.52■■□□□ 1.03
CACNA1AO00555 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.52■■□□□ 1.03
CACNA1AO00555 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.52■■□□□ 1.03
CACNA1AO00555 AC133552.2-202ENST00000575694 574 ntBASIC21.52■■□□□ 1.03
CACNA1AO00555 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1AO00555 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1AO00555 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.51■■□□□ 1.03
CACNA1AO00555 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CACNA1AO00555 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.51■■□□□ 1.03
CACNA1AO00555 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CACNA1AO00555 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.51■■□□□ 1.03
CACNA1AO00555 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1AO00555 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1AO00555 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1AO00555 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1AO00555 AC105233.4-201ENST00000642045 216 ntBASIC21.5■■□□□ 1.03
CACNA1AO00555 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1AO00555 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1AO00555 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1AO00555 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1AO00555 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1AO00555 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.49■■□□□ 1.03
CACNA1AO00555 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1AO00555 RARRES2P4-201ENST00000514074 484 ntBASIC21.49■■□□□ 1.03
CACNA1AO00555 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1AO00555 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1AO00555 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CACNA1AO00555 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1AO00555 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.49■■□□□ 1.03
CACNA1AO00555 AC006058.3-201ENST00000606217 1069 ntBASIC21.49■■□□□ 1.03
CACNA1AO00555 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1AO00555 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1AO00555 LINC01023-201ENST00000606054 436 ntBASIC21.48■■□□□ 1.03
CACNA1AO00555 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1AO00555 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1AO00555 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.48■■□□□ 1.03
CACNA1AO00555 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1AO00555 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1AO00555 AC142381.4-202ENST00000563973 229 ntBASIC21.48■■□□□ 1.03
CACNA1AO00555 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CACNA1AO00555 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1AO00555 ESRRAP1-201ENST00000400596 1257 ntBASIC21.47■■□□□ 1.03
CACNA1AO00555 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.47■■□□□ 1.03
CACNA1AO00555 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1AO00555 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1AO00555 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1AO00555 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1AO00555 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1AO00555 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CACNA1AO00555 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.47■■□□□ 1.03
CACNA1AO00555 DRD5P2-201ENST00000421395 2012 ntBASIC21.46■■□□□ 1.03
CACNA1AO00555 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1AO00555 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1AO00555 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CACNA1AO00555 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CACNA1AO00555 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.46■■□□□ 1.03
CACNA1AO00555 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.46■■□□□ 1.03
CACNA1AO00555 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.46■■□□□ 1.03
CACNA1AO00555 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1AO00555 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1AO00555 CNN2P6-201ENST00000439038 900 ntBASIC21.46■■□□□ 1.03
CACNA1AO00555 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1AO00555 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1AO00555 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CACNA1AO00555 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.45■■□□□ 1.02
CACNA1AO00555 AL445228.2-201ENST00000605589 952 ntBASIC21.45■■□□□ 1.02
CACNA1AO00555 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1AO00555 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.45■■□□□ 1.02
CACNA1AO00555 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1AO00555 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1AO00555 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CACNA1AO00555 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1AO00555 AC128676.1-201ENST00000454392 318 ntBASIC21.45■■□□□ 1.02
CACNA1AO00555 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CACNA1AO00555 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CACNA1AO00555 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1AO00555 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms