Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 AL022069.1-201ENST00000568025 1636 ntBASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 AC005229.4-201ENST00000610085 2198 ntBASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 AC090877.2-201ENST00000558441 1738 ntBASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 AL157400.5-201ENST00000507624 621 ntBASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.47■□□□□ 0.39
TRAV1-1A0A0B4J248 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 ALDH1A3-203ENST00000557963 1670 ntBASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-1A0A0B4J248 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 LINC01521-201ENST00000504184 1943 ntBASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-1A0A0B4J248 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 AC087742.1-201ENST00000575880 1738 ntBASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 SMPD5-203ENST00000639008 1464 ntBASIC17.44■□□□□ 0.38
TRAV1-1A0A0B4J248 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-1A0A0B4J248 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 DUX4L11-201ENST00000611504 1267 ntBASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 DUX4L12-201ENST00000614593 1267 ntBASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 DUX4L14-201ENST00000621227 1267 ntBASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRAV1-1A0A0B4J248 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms