Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CSNK1G1-209ENST00000634811 2592 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
FOXA1P55317 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 AC008132.1-202ENST00000342005 1389 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 C8orf49-201ENST00000525043 1968 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
FOXA1P55317 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 RBM22P2-201ENST00000393978 1814 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 AL139385.1-201ENST00000611744 3272 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 AL157791.1-201ENST00000553667 1699 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 AC008764.8-201ENST00000623966 2717 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA1P55317 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 BANF1P3-201ENST00000412556 261 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 PPP1R2P4-201ENST00000424051 595 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 AC016700.1-201ENST00000429424 312 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
FOXA1P55317 AL118558.3-201ENST00000607414 1079 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA1P55317 AL033527.4-201ENST00000641026 673 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 AC118758.2-201ENST00000614242 2813 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 HNRNPLP1-201ENST00000421896 1501 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 LINC02228-202ENST00000641261 2489 ntBASIC13.32□□□□□ -0.28
FOXA1P55317 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA1P55317 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA1P55317 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
FOXA1P55317 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA1P55317 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA1P55317 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 TNFSF8-201ENST00000223795 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
FOXA1P55317 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC13.31□□□□□ -0.28
FOXA1P55317 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms