Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNMA1-208ENST00000372440 3849 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNMA1-233ENST00000638351 3849 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 GPR12-202ENST00000405846 4850 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 AC008620.2-201ENST00000510294 1569 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
SDCBPO00560 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 PCDHB17P-202ENST00000623466 3066 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
SDCBPO00560 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC11.8□□□□□ -0.52
SDCBPO00560 KRT18P36-201ENST00000411618 1276 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 BNIP3P42-201ENST00000454982 569 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 RPL18P13-201ENST00000478088 569 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC11.8□□□□□ -0.52
SDCBPO00560 SCARNA21-201ENST00000517026 139 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 CD74-212ENST00000524315 584 ntTSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 RIT1-205ENST00000539040 919 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 MAX-218ENST00000557746 571 ntTSL 4 BASIC11.8□□□□□ -0.52
SDCBPO00560 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC11.8□□□□□ -0.52
SDCBPO00560 MIR4259-201ENST00000584466 101 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC11.8□□□□□ -0.52
SDCBPO00560 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC11.8□□□□□ -0.52
SDCBPO00560 BNIP3P29-201ENST00000598302 571 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 DIO1-215ENST00000610607 796 ntTSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 AC011447.5-201ENST00000616168 564 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
SDCBPO00560 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC11.8□□□□□ -0.52
SDCBPO00560 AL845472.1-202ENST00000624675 4080 ntBASIC11.8□□□□□ -0.52
SDCBPO00560 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
SDCBPO00560 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 STK26-204ENST00000481105 1835 ntTSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC11.79□□□□□ -0.52
SDCBPO00560 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC11.79□□□□□ -0.52
SDCBPO00560 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
SDCBPO00560 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC11.79□□□□□ -0.52
SDCBPO00560 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms