Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
SOX2P48431 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC12.24□□□□□ -0.45
SOX2P48431 TMEM104-204ENST00000582330 4679 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.24□□□□□ -0.45
SOX2P48431 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SOX2P48431 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 AL162426.1-201ENST00000624141 743 ntBASIC12.24□□□□□ -0.45
SOX2P48431 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.24□□□□□ -0.45
SOX2P48431 AC025048.6-201ENST00000634326 1161 ntBASIC12.24□□□□□ -0.45
SOX2P48431 RAB8B-201ENST00000321437 4943 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
SOX2P48431 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC12.24□□□□□ -0.45
SOX2P48431 ZFAT-209ENST00000520727 4686 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.23□□□□□ -0.45
SOX2P48431 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 AHCYP4-201ENST00000419201 1315 ntBASIC12.23□□□□□ -0.45
SOX2P48431 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 FAM58BP-201ENST00000439056 645 ntBASIC12.23□□□□□ -0.45
SOX2P48431 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 RN7SL692P-201ENST00000464677 288 ntBASIC12.23□□□□□ -0.45
SOX2P48431 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 CR383656.12-201ENST00000549567 513 ntBASIC12.23□□□□□ -0.45
SOX2P48431 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.23□□□□□ -0.45
SOX2P48431 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
SOX2P48431 AC027307.3-201ENST00000594262 1100 ntBASIC12.23□□□□□ -0.45
SOX2P48431 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 GOLGA2P5-201ENST00000266746 2395 ntBASIC12.23□□□□□ -0.45
SOX2P48431 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
SOX2P48431 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 AC020763.3-201ENST00000625095 2904 ntBASIC12.23□□□□□ -0.45
SOX2P48431 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
SOX2P48431 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SOX2P48431 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC12.22□□□□□ -0.45
SOX2P48431 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 RPL13AP3-202ENST00000494676 1473 ntBASIC12.22□□□□□ -0.45
SOX2P48431 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 C2-209ENST00000452323 1999 ntTSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC12.22□□□□□ -0.45
SOX2P48431 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms