Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 GDA-203ENST00000376986 1771 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL6A2P12110 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.69□□□□□ -0.22
COL6A2P12110 AC005722.1-201ENST00000431878 964 ntBASIC13.69□□□□□ -0.22
COL6A2P12110 RCC2P8-201ENST00000502779 1035 ntBASIC13.69□□□□□ -0.22
COL6A2P12110 COQ10BP2-201ENST00000513804 724 ntBASIC13.69□□□□□ -0.22
COL6A2P12110 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL6A2P12110 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL6A2P12110 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 AC008132.1-202ENST00000342005 1389 ntBASIC13.69□□□□□ -0.22
COL6A2P12110 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A2P12110 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 LINC00265-2P-201ENST00000413372 782 ntBASIC13.68□□□□□ -0.22
COL6A2P12110 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.68□□□□□ -0.22
COL6A2P12110 RPL13AP20-201ENST00000459725 609 ntBASIC13.68□□□□□ -0.22
COL6A2P12110 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A2P12110 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A2P12110 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
COL6A2P12110 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A2P12110 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A2P12110 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A2P12110 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A2P12110 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A2P12110 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A2P12110 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A2P12110 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A2P12110 TBC1D27-202ENST00000424239 1573 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms