Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 Z98259.1-201ENST00000564261 1697 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 NAMA-207ENST00000605707 1748 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 HIST1H2APS2-201ENST00000454426 370 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 SNORA47-201ENST00000458862 138 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 KNOP1P1-201ENST00000542108 989 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AC068831.5-201ENST00000557387 328 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 GGNBP1-204ENST00000613113 887 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS8Q8N3P4 MKRN7P-201ENST00000433469 1371 ntBASIC21.12■□□□□ 0.97
VPS8Q8N3P4 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 AC068587.6-202ENST00000641839 5619 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 EML1-203ENST00000334192 4064 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 TPI1P3-201ENST00000335020 740 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 RN7SKP255-201ENST00000363442 313 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 RN7SKP203-201ENST00000363618 332 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 RN7SKP71-201ENST00000364558 318 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 7SK.1-201ENST00000365328 331 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 HNRNPA1P21-201ENST00000424115 961 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 AL451000.1-201ENST00000451300 1186 ntBASIC21.11■□□□□ 0.97
VPS8Q8N3P4 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS8Q8N3P4 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 AC104581.4-201ENST00000623126 3052 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 OR51A9P-201ENST00000422578 911 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 FAM213AP2-201ENST00000521579 683 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 IGHVII-33-1-201ENST00000524010 280 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 PHBP18-201ENST00000546648 813 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 MIR4746-201ENST00000579802 71 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 AC026304.1-201ENST00000597953 561 ntBASIC21.1■□□□□ 0.97
VPS8Q8N3P4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS8Q8N3P4 CARS-214ENST00000529772 2637 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms