Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AL132642.2-201ENST00000623423 1998 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AC098614.1-201ENST00000368528 745 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 MIR770-201ENST00000390219 98 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AC011742.3-201ENST00000439053 820 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 TTTY23B-201ENST00000442790 549 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AP006547.1-201ENST00000563435 692 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 AL358472.5-202ENST00000641448 1267 ntBASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC28BQ9BUN5 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SMIM21-202ENST00000579022 1834 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AC020763.3-201ENST00000625095 2904 ntBASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AL031432.4-201ENST00000641729 2190 ntBASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms