Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.1□□□□□ -0.15
USP39Q53GS9 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.1□□□□□ -0.15
USP39Q53GS9 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AL512310.5-201ENST00000551999 515 ntBASIC14.1□□□□□ -0.15
USP39Q53GS9 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 ABHD17AP9-201ENST00000561925 548 ntBASIC14.1□□□□□ -0.15
USP39Q53GS9 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC14.1□□□□□ -0.15
USP39Q53GS9 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
USP39Q53GS9 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 PTENP1-202ENST00000532280 3996 ntBASIC14.1□□□□□ -0.15
USP39Q53GS9 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
USP39Q53GS9 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.1□□□□□ -0.15
USP39Q53GS9 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC14.09□□□□□ -0.15
USP39Q53GS9 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
USP39Q53GS9 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 EEF1GP8-201ENST00000506566 1154 ntBASIC14.09□□□□□ -0.15
USP39Q53GS9 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.09□□□□□ -0.15
USP39Q53GS9 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 AC132825.4-202ENST00000578792 434 ntBASIC14.09□□□□□ -0.15
USP39Q53GS9 EIF5AP2-201ENST00000585668 1047 ntBASIC14.09□□□□□ -0.15
USP39Q53GS9 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms