Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 AC138028.6-201ENST00000616106 1482 ntBASIC14.7□□□□□ -0.06
LIG3P49916 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 STRCP1-201ENST00000509801 5328 ntBASIC14.7□□□□□ -0.06
LIG3P49916 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.7□□□□□ -0.06
LIG3P49916 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.7□□□□□ -0.06
LIG3P49916 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.7□□□□□ -0.06
LIG3P49916 EIF4HP1-201ENST00000453115 687 ntBASIC14.7□□□□□ -0.06
LIG3P49916 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.7□□□□□ -0.06
LIG3P49916 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.7□□□□□ -0.06
LIG3P49916 AC106794.1-201ENST00000506935 792 ntBASIC14.7□□□□□ -0.06
LIG3P49916 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.7□□□□□ -0.06
LIG3P49916 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.7□□□□□ -0.06
LIG3P49916 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 AC005962.1-201ENST00000584100 773 ntBASIC14.7□□□□□ -0.06
LIG3P49916 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.7□□□□□ -0.06
LIG3P49916 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 Z98259.2-201ENST00000641583 609 ntBASIC14.7□□□□□ -0.06
LIG3P49916 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 AL133338.1-201ENST00000565695 1517 ntBASIC14.7□□□□□ -0.06
LIG3P49916 HSPA8P5-201ENST00000456928 2069 ntBASIC14.7□□□□□ -0.06
LIG3P49916 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
LIG3P49916 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.7□□□□□ -0.06
LIG3P49916 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIG3P49916 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 AC139712.1-201ENST00000378256 1875 ntBASIC14.69□□□□□ -0.06
LIG3P49916 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 AL590440.2-201ENST00000641973 1595 ntBASIC14.69□□□□□ -0.06
LIG3P49916 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.69□□□□□ -0.06
LIG3P49916 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.69□□□□□ -0.06
LIG3P49916 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.69□□□□□ -0.06
LIG3P49916 AL157407.1-201ENST00000435784 904 ntBASIC14.69□□□□□ -0.06
LIG3P49916 BX284668.4-201ENST00000453917 508 ntBASIC14.69□□□□□ -0.06
LIG3P49916 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.69□□□□□ -0.06
LIG3P49916 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.69□□□□□ -0.06
LIG3P49916 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 AC013355.1-201ENST00000562625 723 ntBASIC14.69□□□□□ -0.06
LIG3P49916 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 AC008805.1-201ENST00000590892 364 ntBASIC14.69□□□□□ -0.06
LIG3P49916 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.69□□□□□ -0.06
LIG3P49916 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 AC138649.2-201ENST00000615886 705 ntBASIC14.69□□□□□ -0.06
LIG3P49916 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.69□□□□□ -0.06
LIG3P49916 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 AC068587.8-201ENST00000641239 219 ntBASIC14.69□□□□□ -0.06
LIG3P49916 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms