Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 PAX6-247ENST00000638965 979 ntTSL 5 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 LINC02381-202ENST00000635070 1341 ntTSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 NHP2-201ENST00000274606 865 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 RN7SKP102-201ENST00000411186 315 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 PHBP3-201ENST00000412562 819 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AC138392.1-201ENST00000427577 921 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 CMC2-202ENST00000486645 766 ntTSL 3 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 SNORD55-201ENST00000581525 80 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AL589743.3-201ENST00000604121 517 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 U62317.4-201ENST00000609758 448 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 CLUHP8-201ENST00000547527 1485 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 HTR3D-202ENST00000382489 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 RBM22P2-201ENST00000393978 1814 ntBASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 SULT1A3-202ENST00000395138 1326 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHANK3Q9BYB0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 NBEAP3-201ENST00000420638 1493 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 GSTM1-204ENST00000369823 852 ntTSL 3 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 HNRNPA1P72-201ENST00000529511 967 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AC126471.1-201ENST00000550676 362 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 RN7SL460P-201ENST00000582806 258 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 MIR1587-201ENST00000583319 53 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 CIRBP-AS1-201ENST00000585832 994 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 PDZRN3-AS1-202ENST00000608304 774 ntTSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 SPAG8-201ENST00000340291 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AZGP1-201ENST00000292401 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 KRTAP10-8-201ENST00000334662 876 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 TFAM-201ENST00000373895 973 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 BCRP5-201ENST00000514371 253 ntBASIC17.1■□□□□ 0.33
SHANK3Q9BYB0 AC025257.1-201ENST00000550926 375 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms