Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
LIG3P49916 NKAIN1P1-201ENST00000435754 582 ntBASIC14.74□□□□□ -0.05
LIG3P49916 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 FAM58BP-201ENST00000439056 645 ntBASIC14.74□□□□□ -0.05
LIG3P49916 KLF2P1-201ENST00000447438 1042 ntBASIC14.74□□□□□ -0.05
LIG3P49916 AL035414.1-201ENST00000451327 857 ntBASIC14.74□□□□□ -0.05
LIG3P49916 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.74□□□□□ -0.05
LIG3P49916 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.74□□□□□ -0.05
LIG3P49916 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.74□□□□□ -0.05
LIG3P49916 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.74□□□□□ -0.05
LIG3P49916 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 AC004899.1-201ENST00000424687 1714 ntBASIC14.74□□□□□ -0.05
LIG3P49916 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.74□□□□□ -0.05
LIG3P49916 AC024075.2-201ENST00000598112 1473 ntBASIC14.74□□□□□ -0.05
LIG3P49916 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 AC026992.2-203ENST00000563004 2419 ntBASIC14.74□□□□□ -0.05
LIG3P49916 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIG3P49916 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC14.74□□□□□ -0.05
LIG3P49916 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC14.74□□□□□ -0.05
LIG3P49916 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 AC005014.1-201ENST00000432006 2976 ntBASIC14.73□□□□□ -0.05
LIG3P49916 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
LIG3P49916 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 AC136604.1-202ENST00000425471 771 ntBASIC14.73□□□□□ -0.05
LIG3P49916 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.73□□□□□ -0.05
LIG3P49916 AC005740.2-201ENST00000511085 419 ntBASIC14.73□□□□□ -0.05
LIG3P49916 AC020914.3-201ENST00000594712 304 ntBASIC14.73□□□□□ -0.05
LIG3P49916 MIR6720-201ENST00000611664 98 ntBASIC14.73□□□□□ -0.05
LIG3P49916 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 AC004923.1-202ENST00000642106 209 ntBASIC14.73□□□□□ -0.05
LIG3P49916 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
LIG3P49916 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIG3P49916 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
LIG3P49916 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.72□□□□□ -0.05
LIG3P49916 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.72□□□□□ -0.05
LIG3P49916 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIG3P49916 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
LIG3P49916 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LIG3P49916 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms