Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MED11-203ENST00000575284 652 ntTSL 3 BASIC22.31■■□□□ 1.16
CUX1P39880 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 OPRM1-210ENST00000452687 1352 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CUX1P39880 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 AL591368.1-201ENST00000437181 1449 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 FTO-214ENST00000636218 2227 ntTSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 PPP1R2P10-201ENST00000393023 595 ntBASIC22.31■■□□□ 1.16
CUX1P39880 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC22.31■■□□□ 1.16
CUX1P39880 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC22.31■■□□□ 1.16
CUX1P39880 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 AC099552.4-201ENST00000624248 949 ntBASIC22.31■■□□□ 1.16
CUX1P39880 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CUX1P39880 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CUX1P39880 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC22.3■■□□□ 1.16
CUX1P39880 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
CUX1P39880 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 KRT18P40-201ENST00000599859 1571 ntBASIC22.3■■□□□ 1.16
CUX1P39880 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC22.3■■□□□ 1.16
CUX1P39880 AC012531.1-201ENST00000562848 2680 ntBASIC22.3■■□□□ 1.16
CUX1P39880 FCRLA-202ENST00000294796 766 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 OR7E122P-201ENST00000383606 1017 ntBASIC22.3■■□□□ 1.16
CUX1P39880 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC22.3■■□□□ 1.16
CUX1P39880 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC22.3■■□□□ 1.16
CUX1P39880 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC22.3■■□□□ 1.16
CUX1P39880 DERL2-206ENST00000572834 589 ntTSL 3 BASIC22.3■■□□□ 1.16
CUX1P39880 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC22.3■■□□□ 1.16
CUX1P39880 AC116036.2-201ENST00000607592 462 ntBASIC22.3■■□□□ 1.16
CUX1P39880 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC22.3■■□□□ 1.16
CUX1P39880 BIN3-212ENST00000640731 450 ntTSL 5 BASIC22.3■■□□□ 1.16
CUX1P39880 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC22.3■■□□□ 1.16
CUX1P39880 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CUX1P39880 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC22.3■■□□□ 1.16
CUX1P39880 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC22.29■■□□□ 1.16
CUX1P39880 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 AC005089.1-201ENST00000619486 2241 ntBASIC22.29■■□□□ 1.16
CUX1P39880 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CUX1P39880 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 PLPP4-201ENST00000369073 1135 ntTSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 AL137077.1-201ENST00000442115 528 ntBASIC22.29■■□□□ 1.16
CUX1P39880 AC069421.1-201ENST00000447462 323 ntBASIC22.29■■□□□ 1.16
CUX1P39880 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 RN7SL452P-201ENST00000482923 291 ntBASIC22.29■■□□□ 1.16
CUX1P39880 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 DIS3L2P1-201ENST00000509197 559 ntBASIC22.29■■□□□ 1.16
CUX1P39880 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 AP001922.5-201ENST00000527803 651 ntTSL 4 BASIC22.29■■□□□ 1.16
CUX1P39880 ROM1-205ENST00000534093 862 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
CUX1P39880 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC22.29■■□□□ 1.16
CUX1P39880 AC090616.6-202ENST00000583601 1088 ntBASIC22.29■■□□□ 1.16
CUX1P39880 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC22.29■■□□□ 1.16
CUX1P39880 GPHB5-202ENST00000621500 543 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
CUX1P39880 ARSG-209ENST00000621439 2599 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC22.29■■□□□ 1.16
CUX1P39880 MAGEB1-201ENST00000378981 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC22.29■■□□□ 1.16
CUX1P39880 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CUX1P39880 CAMK2B-202ENST00000346990 1448 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC22.28■■□□□ 1.16
CUX1P39880 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CUX1P39880 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC22.28■■□□□ 1.16
CUX1P39880 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC22.28■■□□□ 1.16
CUX1P39880 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC22.28■■□□□ 1.16
CUX1P39880 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC22.28■■□□□ 1.16
CUX1P39880 ALG10-202ENST00000538927 571 ntTSL 5 BASIC22.28■■□□□ 1.16
CUX1P39880 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 321.3 ms