Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 MFSD8-213ENST00000641134 1327 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 CST2-201ENST00000304725 748 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 AL591499.1-201ENST00000307155 1153 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 SRSF9P1-201ENST00000399149 530 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 LINC00426-204ENST00000420219 1056 ntTSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC006001.3-205ENST00000428370 579 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 AC092573.1-201ENST00000433054 884 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 IFNWP19-201ENST00000438727 566 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 SRP9P1-201ENST00000445874 261 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
COL9A1P20849 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC068408.1-201ENST00000577406 1144 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 AC020909.3-201ENST00000598194 375 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 RPS5-205ENST00000598495 800 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC14.21□□□□□ -0.13
COL9A1P20849 AL031768.1-201ENST00000606542 701 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 AL009176.1-201ENST00000607876 650 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 OR6C71P-202ENST00000641886 1107 ntBASIC14.21□□□□□ -0.13
COL9A1P20849 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.21□□□□□ -0.13
COL9A1P20849 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.21□□□□□ -0.13
COL9A1P20849 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL9A1P20849 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.21□□□□□ -0.14
COL9A1P20849 AC113367.3-201ENST00000508316 1912 ntBASIC14.21□□□□□ -0.14
COL9A1P20849 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC14.21□□□□□ -0.14
COL9A1P20849 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.21□□□□□ -0.14
COL9A1P20849 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
COL9A1P20849 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL9A1P20849 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
COL9A1P20849 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL9A1P20849 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
COL9A1P20849 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 KLK8-203ENST00000347619 555 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 MGST3-204ENST00000367888 778 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL9A1P20849 AC103592.1-201ENST00000394513 664 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 POLR3DP1-201ENST00000398689 1176 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 RPL3P2-204ENST00000413027 1203 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 LHFPL3-AS1-202ENST00000416376 866 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 ATP5G1P7-201ENST00000444398 400 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 PRDX2P3-201ENST00000515779 586 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC14.2□□□□□ -0.14
COL9A1P20849 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC14.2□□□□□ -0.14
COL9A1P20849 RPL26-206ENST00000582556 763 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms