Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AC026369.2-201ENST00000540136 1101 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TMEM191A-211ENST00000637163 1067 ntBASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AC073648.6-201ENST00000641589 218 ntBASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TMCC2-203ENST00000358024 3738 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 IKBKB-230ENST00000629753 4069 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CCDC129-201ENST00000319386 4544 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TMEM33-202ENST00000325094 6221 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MRPL48-201ENST00000310614 1536 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TRAF3IP3-202ENST00000367024 2331 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ATP2A1-203ENST00000536376 3130 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 KRT8P31-201ENST00000504812 1408 ntBASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 NRP1-206ENST00000374867 5877 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 PLEKHG3-204ENST00000484731 3001 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TACC2-228ENST00000515273 9245 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 RAPGEF3-201ENST00000389212 3294 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ETFDH-206ENST00000511912 3282 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 LINC02267-201ENST00000513393 1687 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 TLR12P-201ENST00000413515 2706 ntBASIC8.52□□□□□ -1.04
LINC00643Q86TS7 LINC01471-201ENST00000461398 3079 ntTSL 5 BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 ZKSCAN3-201ENST00000252211 4725 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 AHSG-201ENST00000273784 1553 ntAPPRIS ALT2 TSL 3 BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 PPP1R26P5-201ENST00000416640 3664 ntBASIC8.52□□□□□ -1.04
LINC00643Q86TS7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 VCPIP1-201ENST00000310421 9942 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC8.52□□□□□ -1.04
LINC00643Q86TS7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CBLB-203ENST00000403724 3350 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 RBM7-203ENST00000540163 4243 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 MYO10-212ENST00000515803 4839 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 LHX4-201ENST00000263726 5820 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 MCCC2-201ENST00000340941 3665 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 BAHD1-201ENST00000416165 4526 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 PI4KB-202ENST00000368873 3340 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TRMT10B-203ENST00000377754 1881 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 API5-208ENST00000531273 1868 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AL118508.3-201ENST00000623468 1854 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 HCG2040054-202ENST00000439182 362 ntTSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TARDBPP1-201ENST00000442013 1203 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AL671277.2-201ENST00000458060 996 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 GUCY1A3-207ENST00000511108 2992 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 RNA5SP410-201ENST00000516285 106 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AP005901.3-202ENST00000581653 237 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 BNIP3P18-201ENST00000593976 575 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 MIR6821-201ENST00000617625 74 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC113410.3-201ENST00000623366 203 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AL139288.1-201ENST00000623748 933 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 ZNF730-202ENST00000597761 2374 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 PSMD10-201ENST00000217958 1546 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC010624.1-201ENST00000527209 1525 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC005072.1-201ENST00000606640 1779 ntBASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TACC2-201ENST00000260733 3644 ntAPPRIS P4 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 MKX-202ENST00000419761 3638 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms