Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 AL583805.1-201ENST00000391389 531 ntBASIC14.57□□□□□ -0.08
HDAC4P56524 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 CD81-209ENST00000492627 886 ntTSL 3 BASIC14.57□□□□□ -0.08
HDAC4P56524 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.57□□□□□ -0.08
HDAC4P56524 CHMP4BP1-201ENST00000556017 588 ntBASIC14.57□□□□□ -0.08
HDAC4P56524 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.57□□□□□ -0.08
HDAC4P56524 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 CAP2P1-201ENST00000557743 1390 ntBASIC14.57□□□□□ -0.08
HDAC4P56524 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.57□□□□□ -0.08
HDAC4P56524 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.57□□□□□ -0.08
HDAC4P56524 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
HDAC4P56524 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HDAC4P56524 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 AC009474.1-201ENST00000455096 1565 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 DDC-204ENST00000426377 1700 ntTSL 3 BASIC14.56□□□□□ -0.08
HDAC4P56524 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.56□□□□□ -0.08
HDAC4P56524 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.56□□□□□ -0.08
HDAC4P56524 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 LINC00265-2P-201ENST00000413372 782 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.56□□□□□ -0.08
HDAC4P56524 AC098934.1-203ENST00000442868 1262 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AP000358.1-201ENST00000456260 156 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.56□□□□□ -0.08
HDAC4P56524 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HDAC4P56524 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.56□□□□□ -0.08
HDAC4P56524 SIGLEC18P-201ENST00000602271 909 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC007326.1-201ENST00000604539 458 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AL606495.2-201ENST00000605867 535 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC097724.1-201ENST00000609581 426 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC009560.1-201ENST00000620208 434 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC007718.1-201ENST00000621078 280 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 AC091812.3-201ENST00000621362 345 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 CU633904.3-201ENST00000624042 1029 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.56□□□□□ -0.08
HDAC4P56524 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 TBC1D3J-201ENST00000620719 1426 ntBASIC14.56□□□□□ -0.08
HDAC4P56524 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HDAC4P56524 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HDAC4P56524 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.56□□□□□ -0.08
HDAC4P56524 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HDAC4P56524 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HDAC4P56524 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.55□□□□□ -0.08
HDAC4P56524 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.55□□□□□ -0.08
HDAC4P56524 AC108024.1-201ENST00000626286 1721 ntBASIC14.55□□□□□ -0.08
HDAC4P56524 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HDAC4P56524 Z98885.3-201ENST00000624882 1757 ntBASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms