Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.32□□□□□ -0.44
SOX2P48431 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC12.32□□□□□ -0.44
SOX2P48431 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 AC002350.2-201ENST00000623894 1828 ntBASIC12.32□□□□□ -0.44
SOX2P48431 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC12.32□□□□□ -0.44
SOX2P48431 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
SOX2P48431 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SOX2P48431 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 VENTXP1-201ENST00000569334 2716 ntBASIC12.31□□□□□ -0.44
SOX2P48431 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 MARK2P16-201ENST00000605714 1723 ntBASIC12.31□□□□□ -0.44
SOX2P48431 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 AC008620.2-201ENST00000510294 1569 ntBASIC12.31□□□□□ -0.44
SOX2P48431 MANEA-AS1-201ENST00000564541 2268 ntBASIC12.31□□□□□ -0.44
SOX2P48431 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 AL139158.3-201ENST00000641212 1562 ntBASIC12.31□□□□□ -0.44
SOX2P48431 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 ZNF493-208ENST00000599461 1769 ntBASIC12.31□□□□□ -0.44
SOX2P48431 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
SOX2P48431 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 SNORA50C-201ENST00000408535 133 ntBASIC12.31□□□□□ -0.44
SOX2P48431 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC12.31□□□□□ -0.44
SOX2P48431 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 AC100850.1-201ENST00000506768 649 ntBASIC12.31□□□□□ -0.44
SOX2P48431 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 PGAM1P5-201ENST00000548011 764 ntBASIC12.31□□□□□ -0.44
SOX2P48431 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 BTNL10-201ENST00000595971 695 ntBASIC12.31□□□□□ -0.44
SOX2P48431 AC009955.4-201ENST00000597192 544 ntBASIC12.31□□□□□ -0.44
SOX2P48431 AC009884.2-201ENST00000603110 324 ntBASIC12.31□□□□□ -0.44
SOX2P48431 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC12.31□□□□□ -0.44
SOX2P48431 GPALPP1-207ENST00000611650 899 ntBASIC12.31□□□□□ -0.44
SOX2P48431 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 SNORA50.1-201ENST00000628590 135 ntBASIC12.31□□□□□ -0.44
SOX2P48431 Z98259.2-201ENST00000641583 609 ntBASIC12.31□□□□□ -0.44
SOX2P48431 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
SOX2P48431 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 AL021155.1-201ENST00000438808 2637 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms