Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 PXK-210ENST00000479241 2817 ntTSL 2 BASIC14.21□□□□□ -0.14
HMGA1P17096 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.21□□□□□ -0.14
HMGA1P17096 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HMGA1P17096 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGA1P17096 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGA1P17096 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGA1P17096 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 ZNF493-208ENST00000599461 1769 ntBASIC14.2□□□□□ -0.14
HMGA1P17096 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
HMGA1P17096 MPV17-209ENST00000405983 859 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC14.2□□□□□ -0.14
HMGA1P17096 AC092570.1-201ENST00000414446 469 ntBASIC14.2□□□□□ -0.14
HMGA1P17096 HNRNPA1P21-201ENST00000424115 961 ntBASIC14.2□□□□□ -0.14
HMGA1P17096 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
HMGA1P17096 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 AC010531.8-201ENST00000623341 685 ntBASIC14.2□□□□□ -0.14
HMGA1P17096 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 KRT8P38-201ENST00000441370 1430 ntBASIC14.2□□□□□ -0.14
HMGA1P17096 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HMGA1P17096 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGA1P17096 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGA1P17096 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.19□□□□□ -0.14
HMGA1P17096 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 ABCD1P2-201ENST00000429313 1601 ntBASIC14.19□□□□□ -0.14
HMGA1P17096 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HMGA1P17096 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGA1P17096 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 AC112250.1-201ENST00000504640 745 ntBASIC14.19□□□□□ -0.14
HMGA1P17096 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 AC012158.2-201ENST00000536546 354 ntBASIC14.19□□□□□ -0.14
HMGA1P17096 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGA1P17096 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGA1P17096 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC14.19□□□□□ -0.14
HMGA1P17096 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HMGA1P17096 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGA1P17096 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms