Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC034205.3-201ENST00000603595 1376 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 WSB1-203ENST00000427287 1149 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AQP7-207ENST00000447660 998 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 MTND6P4-201ENST00000506002 522 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 MIR4526-201ENST00000583168 87 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 WSB1-213ENST00000583193 552 ntTSL 4 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL109983.1-201ENST00000603234 646 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC211476.2-201ENST00000608799 708 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SNX18-202ENST00000343017 3140 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC046158.3-201ENST00000624947 2558 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC118758.1-201ENST00000448242 564 ntTSL 4 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL121790.2-201ENST00000553425 379 ntTSL 4 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 CALM3-206ENST00000594523 540 ntTSL 4 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC116036.2-201ENST00000607592 462 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 TNNT2-201ENST00000236918 1098 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL512444.1-201ENST00000419644 480 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 HDAC2-AS2-216ENST00000522844 808 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC064862.6-203ENST00000605139 691 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 MIR6749-201ENST00000617008 69 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC080038.2-201ENST00000617734 423 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
VPS13AQ96RL7 PCDHB19P-202ENST00000625133 2914 ntBASIC13.24□□□□□ -0.29
VPS13AQ96RL7 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 LILRB4-205ENST00000430952 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 NBEAP3-201ENST00000420638 1493 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 OR6N1-201ENST00000335094 1027 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 SNORA74.2-201ENST00000516496 180 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 MRNIP-216ENST00000521333 410 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 RN7SL238P-201ENST00000613832 290 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 Metazoa_SRP.139-201ENST00000616096 290 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 RN7SL106P-201ENST00000618104 290 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
VPS13AQ96RL7 CACYBPP3-201ENST00000406011 625 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AL021407.3-201ENST00000407522 486 ntBASIC13.23□□□□□ -0.29
VPS13AQ96RL7 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms