Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 CTNNBL1-203ENST00000373473 1493 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 KLK8-203ENST00000347619 555 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 RN7SL677P-201ENST00000466970 319 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 RN7SL363P-201ENST00000482412 273 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 AP001979.1-201ENST00000529222 751 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 NID2-208ENST00000617139 3827 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 CREB5-203ENST00000396299 2294 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC072061.1-201ENST00000569710 2234 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 KRT40-202ENST00000398486 1772 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 DNM1P48-201ENST00000419538 439 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC092284.1-201ENST00000511386 1289 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 GOLGA2P10-201ENST00000550961 817 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 NAA38-204ENST00000575208 529 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 MIR4309-201ENST00000582498 83 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC022382.1-201ENST00000602768 336 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 AL133551.1-201ENST00000610279 1222 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13CQ709C8 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 RN7SL487P-201ENST00000468140 344 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 FPGT-205ENST00000482102 561 ntTSL 4 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
VPS13CQ709C8 PDLIM1P1-201ENST00000604187 969 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 U62317.4-201ENST00000609758 448 ntBASIC11.1□□□□□ -0.63
VPS13CQ709C8 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 TBC1D3P1-201ENST00000590047 1693 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 LMX1A-203ENST00000367893 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 PTAFR-201ENST00000305392 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 AC005822.1-201ENST00000414124 1034 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 IGHVII-74-1-201ENST00000517572 241 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 AL158032.2-201ENST00000616818 195 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13CQ709C8 AL139424.3-202ENST00000641619 917 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.09□□□□□ -0.63
VPS13CQ709C8 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13CQ709C8 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms