Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 IGHVII-33-1-201ENST00000524010 280 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 CDC37P2-201ENST00000562287 1029 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC12.93□□□□□ -0.34
COL5A1P20908 AC063977.2-201ENST00000601996 421 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 Z82244.2-201ENST00000632196 448 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC12.93□□□□□ -0.34
COL5A1P20908 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 AL157832.2-205ENST00000597245 1649 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 ZSCAN5DP-201ENST00000600684 1488 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 SNX18-202ENST00000343017 3140 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 AC138932.1-201ENST00000534164 6830 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 AC090340.1-201ENST00000620778 4980 ntBASIC12.93□□□□□ -0.34
COL5A1P20908 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.93□□□□□ -0.34
COL5A1P20908 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC12.93□□□□□ -0.34
COL5A1P20908 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
COL5A1P20908 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL5A1P20908 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL5A1P20908 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 AL031577.1-201ENST00000339867 399 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL5A1P20908 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 SERF2-205ENST00000403425 690 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC12.92□□□□□ -0.34
COL5A1P20908 POLR2LP1-206ENST00000444785 187 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL5A1P20908 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC104115.1-201ENST00000484005 623 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 FAM86JP-202ENST00000484500 988 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC12.92□□□□□ -0.34
COL5A1P20908 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 AC117500.5-201ENST00000623233 527 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL5A1P20908 MKRN7P-201ENST00000433469 1371 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 AC135782.3-201ENST00000562782 2105 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC072061.1-201ENST00000569710 2234 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL5A1P20908 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 WDR54-202ENST00000409791 854 ntTSL 3 BASIC12.92□□□□□ -0.34
COL5A1P20908 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC12.92□□□□□ -0.34
COL5A1P20908 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC103724.2-201ENST00000520355 476 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC12.92□□□□□ -0.34
COL5A1P20908 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 ABCD1P3-201ENST00000562927 605 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC12.92□□□□□ -0.34
COL5A1P20908 AC009812.1-201ENST00000605948 1059 ntBASIC12.92□□□□□ -0.34
COL5A1P20908 AC022001.3-201ENST00000606330 596 ntBASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms