Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
ERCC4Q92889 CICP1-201ENST00000416803 2410 ntBASIC15.89■□□□□ 0.13
ERCC4Q92889 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC15.89■□□□□ 0.13
ERCC4Q92889 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 AC026271.4-201ENST00000578214 1833 ntBASIC15.89■□□□□ 0.13
ERCC4Q92889 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ERCC4Q92889 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
ERCC4Q92889 PXK-210ENST00000479241 2817 ntTSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
ERCC4Q92889 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC15.89■□□□□ 0.13
ERCC4Q92889 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ERCC4Q92889 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
ERCC4Q92889 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 HAL-202ENST00000538703 2637 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ERCC4Q92889 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ERCC4Q92889 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC060814.4-201ENST00000594169 2163 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC079178.1-201ENST00000420915 656 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 HLA-V-201ENST00000429037 534 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC15.88■□□□□ 0.13
ERCC4Q92889 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.88■□□□□ 0.13
ERCC4Q92889 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC008805.1-201ENST00000590892 364 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
ERCC4Q92889 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ERCC4Q92889 MKRN5P-201ENST00000445263 1467 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 AL590824.1-201ENST00000403828 1349 ntBASIC15.88■□□□□ 0.13
ERCC4Q92889 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC15.88■□□□□ 0.13
ERCC4Q92889 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC15.88■□□□□ 0.13
ERCC4Q92889 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ERCC4Q92889 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ERCC4Q92889 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 EGLN3-205ENST00000547327 2849 ntBASIC15.87■□□□□ 0.13
ERCC4Q92889 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 GK-202ENST00000378941 458 ntTSL 3 BASIC15.87■□□□□ 0.13
ERCC4Q92889 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ERCC4Q92889 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
ERCC4Q92889 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ERCC4Q92889 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC15.87■□□□□ 0.13
ERCC4Q92889 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.87■□□□□ 0.13
ERCC4Q92889 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ERCC4Q92889 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.87■□□□□ 0.13
ERCC4Q92889 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC15.87■□□□□ 0.13
ERCC4Q92889 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms