Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AL121949.3-201ENST00000406684 385 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 KRT18P44-201ENST00000416086 1285 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SDCBP2P1-201ENST00000416115 614 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AC098657.1-201ENST00000416270 1135 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 DPY19L2P4-201ENST00000479881 442 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 MIR3940-201ENST00000579148 102 ntBASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LYSMD4Q5XG99 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 RN7SL523P-201ENST00000484401 298 ntBASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 RNA5SP420-201ENST00000516997 137 ntBASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 MBP-230ENST00000528160 584 ntTSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AP000920.1-201ENST00000531824 344 ntBASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 DUT-207ENST00000559416 635 ntTSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AC005746.3-201ENST00000614751 393 ntBASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AC090510.3-201ENST00000615831 821 ntBASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
LYSMD4Q5XG99 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms