Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL161932.2-201ENST00000435436 679 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 POM121L9P-203ENST00000441984 1285 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 NOC2LP1-201ENST00000450578 752 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC234782.1-201ENST00000451950 919 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 NUP210P1-202ENST00000504322 710 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AP000593.2-201ENST00000542775 1433 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC027237.1-201ENST00000560942 655 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 RN7SL574P-201ENST00000581512 297 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AP003392.6-201ENST00000607709 325 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC138466.3-201ENST00000619983 221 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AL157792.1-201ENST00000488281 530 ntBASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AC010234.1-201ENST00000494599 870 ntBASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 RN7SL48P-201ENST00000579283 293 ntBASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AL157996.1-201ENST00000624684 2299 ntBASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 AC025271.4-201ENST00000621477 1726 ntBASIC11.72□□□□□ -0.53
PDLIM3Q53GG5 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AGAP10P-201ENST00000454844 2418 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC009093.10-201ENST00000641956 1442 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms