Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
H3F3AP84243 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
H3F3AP84243 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 AL391647.1-201ENST00000395664 511 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC12.48□□□□□ -0.41
H3F3AP84243 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC12.48□□□□□ -0.41
H3F3AP84243 AC007279.1-201ENST00000448547 837 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.48□□□□□ -0.41
H3F3AP84243 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 COQ10BP2-201ENST00000513804 724 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.48□□□□□ -0.41
H3F3AP84243 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.48□□□□□ -0.41
H3F3AP84243 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 AC105129.2-201ENST00000559536 390 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.48□□□□□ -0.41
H3F3AP84243 MIR4265-201ENST00000582152 99 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 AC106872.11-201ENST00000605838 421 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 AC084346.2-201ENST00000607097 949 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 NRADDP-202ENST00000641269 1585 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AF013593.1-201ENST00000458074 1487 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
H3F3AP84243 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
H3F3AP84243 AL512306.1-201ENST00000432698 848 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 SCARNA12-201ENST00000459155 270 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 AC130709.1-201ENST00000484779 1212 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.47□□□□□ -0.41
H3F3AP84243 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC12.47□□□□□ -0.41
H3F3AP84243 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.47□□□□□ -0.41
H3F3AP84243 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 MIR3907-201ENST00000579424 151 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
H3F3AP84243 GARS-210ENST00000627489 324 ntTSL 4 BASIC12.47□□□□□ -0.41
H3F3AP84243 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 AL031595.1-201ENST00000623969 4709 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 AL365181.3-201ENST00000605886 3222 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AC135782.3-201ENST00000562782 2105 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AL359845.1-201ENST00000458202 1648 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms