Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.61□□□□□ -0.07
HDAC4P56524 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.61□□□□□ -0.07
HDAC4P56524 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 MARK2P16-201ENST00000605714 1723 ntBASIC14.61□□□□□ -0.07
HDAC4P56524 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HDAC4P56524 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HDAC4P56524 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 KRT8P18-201ENST00000413425 1445 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
HDAC4P56524 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 AL359845.1-201ENST00000458202 1648 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 AL031595.1-201ENST00000623969 4709 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
HDAC4P56524 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 MIR557-201ENST00000385239 98 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 PPP1R2P4-201ENST00000424051 595 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.6□□□□□ -0.07
HDAC4P56524 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
HDAC4P56524 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.6□□□□□ -0.07
HDAC4P56524 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 RTN3P1-201ENST00000536295 711 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 KLF17P1-201ENST00000547105 1126 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
HDAC4P56524 AC015967.2-201ENST00000624092 234 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 AL161773.1-201ENST00000624845 863 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 AC006435.4-201ENST00000625037 234 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 AL356737.1-201ENST00000634391 234 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 AL139424.3-202ENST00000641619 917 ntBASIC14.6□□□□□ -0.07
HDAC4P56524 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.6□□□□□ -0.07
HDAC4P56524 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HDAC4P56524 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.6□□□□□ -0.07
HDAC4P56524 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HDAC4P56524 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HDAC4P56524 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.59□□□□□ -0.07
HDAC4P56524 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
HDAC4P56524 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 AL391647.1-201ENST00000395664 511 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.59□□□□□ -0.07
HDAC4P56524 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HDAC4P56524 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.59□□□□□ -0.07
HDAC4P56524 DUTP3-201ENST00000450025 415 ntBASIC14.59□□□□□ -0.07
HDAC4P56524 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.59□□□□□ -0.07
HDAC4P56524 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms