Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC15.61■□□□□ 0.09
CIITAP33076 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 AL358781.1-202ENST00000321081 1360 ntBASIC15.61■□□□□ 0.09
CIITAP33076 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC15.61■□□□□ 0.09
CIITAP33076 AC135782.3-201ENST00000562782 2105 ntBASIC15.61■□□□□ 0.09
CIITAP33076 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CIITAP33076 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 AC108024.1-201ENST00000626286 1721 ntBASIC15.6■□□□□ 0.09
CIITAP33076 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 AL513497.1-201ENST00000624273 2083 ntBASIC15.6■□□□□ 0.09
CIITAP33076 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
CIITAP33076 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 OR7E115P-201ENST00000382617 1024 ntBASIC15.6■□□□□ 0.09
CIITAP33076 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 ACTG1P19-201ENST00000418987 1116 ntBASIC15.6■□□□□ 0.09
CIITAP33076 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.6■□□□□ 0.09
CIITAP33076 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.6■□□□□ 0.09
CIITAP33076 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 AP003398.1-201ENST00000531124 318 ntBASIC15.6■□□□□ 0.09
CIITAP33076 VENTXP3-201ENST00000546480 773 ntBASIC15.6■□□□□ 0.09
CIITAP33076 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 MIR5572-201ENST00000583188 137 ntBASIC15.6■□□□□ 0.09
CIITAP33076 MIR8071-1-201ENST00000616769 65 ntBASIC15.6■□□□□ 0.09
CIITAP33076 MIR8071-2-201ENST00000616772 65 ntBASIC15.6■□□□□ 0.09
CIITAP33076 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.6■□□□□ 0.09
CIITAP33076 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CIITAP33076 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 AC092978.1-202ENST00000637590 1327 ntBASIC15.6■□□□□ 0.09
CIITAP33076 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 MANEA-AS1-201ENST00000564541 2268 ntBASIC15.6■□□□□ 0.09
CIITAP33076 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.6■□□□□ 0.09
CIITAP33076 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CIITAP33076 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CIITAP33076 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 AL357563.1-201ENST00000404728 395 ntBASIC15.59■□□□□ 0.09
CIITAP33076 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.59■□□□□ 0.09
CIITAP33076 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 AC132812.1-201ENST00000583145 892 ntBASIC15.59■□□□□ 0.09
CIITAP33076 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.59■□□□□ 0.09
CIITAP33076 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.59■□□□□ 0.09
CIITAP33076 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 LINC00638-201ENST00000555578 2518 ntBASIC15.59■□□□□ 0.09
CIITAP33076 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.59■□□□□ 0.09
CIITAP33076 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CIITAP33076 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CIITAP33076 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms