Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.08■□□□□ 0.49
FOXA2Q9Y261 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXA2Q9Y261 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
FOXA2Q9Y261 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.06■□□□□ 0.48
FOXA2Q9Y261 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA2Q9Y261 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 AC004448.1-201ENST00000458332 883 ntBASIC18.05■□□□□ 0.48
FOXA2Q9Y261 AC092028.1-203ENST00000608262 953 ntBASIC18.05■□□□□ 0.48
FOXA2Q9Y261 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA2Q9Y261 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 GUSBP5-202ENST00000510805 1989 ntBASIC18.04■□□□□ 0.48
FOXA2Q9Y261 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA2Q9Y261 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 AC079630.1-202ENST00000618127 1840 ntBASIC18.03■□□□□ 0.48
FOXA2Q9Y261 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 SNX5-217ENST00000606557 1087 ntBASIC18.03■□□□□ 0.48
FOXA2Q9Y261 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA2Q9Y261 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 TSPY9P-201ENST00000440215 945 ntBASIC18.02■□□□□ 0.48
FOXA2Q9Y261 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 TSPY11P-201ENST00000442607 1045 ntBASIC18.02■□□□□ 0.48
FOXA2Q9Y261 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.02■□□□□ 0.48
FOXA2Q9Y261 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA2Q9Y261 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms