Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 SERBP1P1-201ENST00000396021 1160 ntBASIC23.9■■□□□ 1.42
SNX25Q9H3E2 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.9■■□□□ 1.42
SNX25Q9H3E2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SNX25Q9H3E2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
SNX25Q9H3E2 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SNX25Q9H3E2 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
SNX25Q9H3E2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SNX25Q9H3E2 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 AC135279.3-201ENST00000610945 1311 ntBASIC23.88■■□□□ 1.41
SNX25Q9H3E2 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 AC079630.1-202ENST00000618127 1840 ntBASIC23.88■■□□□ 1.41
SNX25Q9H3E2 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SNX25Q9H3E2 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 LINC01529-204ENST00000636474 1715 ntBASIC23.87■■□□□ 1.41
SNX25Q9H3E2 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 AC024257.2-201ENST00000549699 147 ntBASIC23.87■■□□□ 1.41
SNX25Q9H3E2 AC106739.1-201ENST00000617035 715 ntBASIC23.87■■□□□ 1.41
SNX25Q9H3E2 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.87■■□□□ 1.41
SNX25Q9H3E2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 MIR3181-201ENST00000578512 73 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 AL138724.1-201ENST00000606771 1088 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 pRNA.6-201ENST00000610482 90 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 pRNA.5-201ENST00000612139 90 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 pRNA.11-201ENST00000618423 90 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 pRNA.13-201ENST00000619112 90 ntBASIC23.86■■□□□ 1.41
SNX25Q9H3E2 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SNX25Q9H3E2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 DUX4L4-201ENST00000566884 1269 ntBASIC23.85■■□□□ 1.41
SNX25Q9H3E2 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SNX25Q9H3E2 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SNX25Q9H3E2 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SNX25Q9H3E2 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.83■■□□□ 1.41
SNX25Q9H3E2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SNX25Q9H3E2 MIR638-201ENST00000385237 100 ntBASIC23.83■■□□□ 1.41
SNX25Q9H3E2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.83■■□□□ 1.41
SNX25Q9H3E2 AC011298.3-201ENST00000615796 283 ntBASIC23.83■■□□□ 1.41
SNX25Q9H3E2 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.83■■□□□ 1.41
SNX25Q9H3E2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
SNX25Q9H3E2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
SNX25Q9H3E2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SNX25Q9H3E2 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX25Q9H3E2 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.82■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms