Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RSPO3Q9BXY4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RSPO3Q9BXY4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RSPO3Q9BXY4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.71■□□□□ 0.91
RSPO3Q9BXY4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RSPO3Q9BXY4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.7■□□□□ 0.9
RSPO3Q9BXY4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 YBX1P4-201ENST00000392794 808 ntBASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 AC021242.3-201ENST00000607598 1377 ntBASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RSPO3Q9BXY4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 AL031848.2-201ENST00000607670 837 ntBASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RSPO3Q9BXY4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 LINC00526-201ENST00000581067 1875 ntBASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RSPO3Q9BXY4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 CLDN5-201ENST00000403084 2357 ntBASIC20.66■□□□□ 0.9
RSPO3Q9BXY4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RSPO3Q9BXY4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RSPO3Q9BXY4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
RSPO3Q9BXY4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RSPO3Q9BXY4 ECEL1P1-201ENST00000373592 1742 ntBASIC20.64■□□□□ 0.9
RSPO3Q9BXY4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.64■□□□□ 0.9
RSPO3Q9BXY4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RSPO3Q9BXY4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RSPO3Q9BXY4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RSPO3Q9BXY4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RSPO3Q9BXY4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms