Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 PTCHD3P2-201ENST00000424937 1205 ntBASIC6.84□□□□□ -1.31
SYNE1Q8NF91 STK32C-205ENST00000456004 607 ntTSL 2 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
SYNE1Q8NF91 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SYNE1Q8NF91 CD37-213ENST00000598095 1598 ntTSL 2 BASIC6.84□□□□□ -1.32
SYNE1Q8NF91 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 DENND3-207ENST00000518347 850 ntTSL 2 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 AC022211.4-201ENST00000625094 2161 ntBASIC6.83□□□□□ -1.32
SYNE1Q8NF91 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ID1-201ENST00000376105 1233 ntBASIC6.83□□□□□ -1.32
SYNE1Q8NF91 GRAMD4P2-201ENST00000423297 1097 ntBASIC6.83□□□□□ -1.32
SYNE1Q8NF91 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SYNE1Q8NF91 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AC011298.3-201ENST00000615796 283 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 HTR7P1-202ENST00000624664 4411 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AC008764.7-201ENST00000593779 1081 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AC027682.1-201ENST00000562846 899 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 MIR3181-201ENST00000578512 73 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 JTB-203ENST00000368589 1216 ntTSL 2 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 BX842568.3-201ENST00000418104 571 ntBASIC6.82□□□□□ -1.32
SYNE1Q8NF91 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
SYNE1Q8NF91 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms