Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC35.37■■■■□ 3.25
VPS8Q8N3P4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC35.36■■■■□ 3.25
VPS8Q8N3P4 MIR939-201ENST00000401314 82 ntBASIC35.36■■■■□ 3.25
VPS8Q8N3P4 HES6-206ENST00000409574 738 ntTSL 2 BASIC35.36■■■■□ 3.25
VPS8Q8N3P4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC35.36■■■■□ 3.25
VPS8Q8N3P4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC35.36■■■■□ 3.25
VPS8Q8N3P4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC35.35■■■■□ 3.25
VPS8Q8N3P4 AC005837.3-201ENST00000612163 286 ntBASIC35.35■■■■□ 3.25
VPS8Q8N3P4 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
VPS8Q8N3P4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
VPS8Q8N3P4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC35.34■■■■□ 3.25
VPS8Q8N3P4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
VPS8Q8N3P4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
VPS8Q8N3P4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
VPS8Q8N3P4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC35.32■■■■□ 3.25
VPS8Q8N3P4 AF213884.3-201ENST00000563833 479 ntBASIC35.32■■■■□ 3.25
VPS8Q8N3P4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 GRAMD4P4-201ENST00000613563 1115 ntBASIC35.32■■■■□ 3.24
VPS8Q8N3P4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC35.32■■■■□ 3.24
VPS8Q8N3P4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
VPS8Q8N3P4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
VPS8Q8N3P4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC35.31■■■■□ 3.24
VPS8Q8N3P4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC35.31■■■■□ 3.24
VPS8Q8N3P4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
VPS8Q8N3P4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC35.3■■■■□ 3.24
VPS8Q8N3P4 LINC01529-204ENST00000636474 1715 ntBASIC35.3■■■■□ 3.24
VPS8Q8N3P4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC35.29■■■■□ 3.24
VPS8Q8N3P4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC35.29■■■■□ 3.24
VPS8Q8N3P4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 AC092068.2-201ENST00000590491 1708 ntBASIC35.28■■■■□ 3.24
VPS8Q8N3P4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 AL355001.2-201ENST00000620617 1191 ntBASIC35.28■■■■□ 3.24
VPS8Q8N3P4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC35.28■■■■□ 3.24
VPS8Q8N3P4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC35.27■■■■□ 3.24
VPS8Q8N3P4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC35.26■■■■□ 3.24
VPS8Q8N3P4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC35.26■■■■□ 3.24
VPS8Q8N3P4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC35.26■■■■□ 3.24
VPS8Q8N3P4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC35.26■■■■□ 3.24
VPS8Q8N3P4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC35.26■■■■□ 3.24
VPS8Q8N3P4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC35.26■■■■□ 3.23
VPS8Q8N3P4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC35.26■■■■□ 3.23
VPS8Q8N3P4 AC133637.1-201ENST00000624115 1537 ntBASIC35.26■■■■□ 3.23
VPS8Q8N3P4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC35.25■■■■□ 3.23
VPS8Q8N3P4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
VPS8Q8N3P4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC35.25■■■■□ 3.23
VPS8Q8N3P4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
VPS8Q8N3P4 AC027682.1-201ENST00000562846 899 ntBASIC35.24■■■■□ 3.23
VPS8Q8N3P4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC35.24■■■■□ 3.23
VPS8Q8N3P4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC35.24■■■■□ 3.23
VPS8Q8N3P4 ANOS2P-203ENST00000472227 1816 ntBASIC35.24■■■■□ 3.23
VPS8Q8N3P4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 SLC47A1P1-202ENST00000449666 945 ntBASIC35.23■■■■□ 3.23
VPS8Q8N3P4 AL136967.2-201ENST00000623968 743 ntBASIC35.23■■■■□ 3.23
VPS8Q8N3P4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 AC142381.2-201ENST00000566120 298 ntBASIC35.23■■■■□ 3.23
VPS8Q8N3P4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC35.23■■■■□ 3.23
VPS8Q8N3P4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
VPS8Q8N3P4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC35.22■■■■□ 3.23
VPS8Q8N3P4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC35.22■■■■□ 3.23
VPS8Q8N3P4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms